accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	versionStatus	versionComment	pipelineVersion	amplicon_pcr_primer_scheme	authors	bioproject_accession	biosample_accession	collection_method	coverage_10x	dehosting_method	environmental_material	environmental_site	genomic_data_type	geo_loc_latitude	geo_loc_longitude	geo_loc_name_city	geo_loc_name_country	geo_loc_name_site	geo_loc_name_state_province_territory_region	insdc_sequence_read_accession	lineage_analysis_software	lineage_barcodes_version	lineage_prevalence	lineage_prevalence_full	lineage_prevalence_plot	mean_depth	predominant_lineage	purpose_of_sampling	purpose_of_sequencing	raw_sequence_data_processing_method	sample_collected_by	sample_collection_date	sample_collection_end_date	sampling_site_id	scale_of_sampling	sequenced_by	sequenced_by_contact_email	sequenced_by_contact_name	sequencing_assay_type	sequencing_date	sequencing_instrument	specimen_sample_collector_sample_id	wastewater_system_type	water_catchment_area_human_population_measurement_value	reads	snvs	depth	lineagePrevalence
WW_000001Y.1	WW_000001Y	1	BB-2026-08-24	false	testuser	Wastewater test data	1	1791762595	2026-10-11	1791762673	2026-10-11	LATEST_VERSION	Test data: the metadata are fictional. The reads are from WASAP sample https://db.wasap.genspectrum.org/seq/WISE_00013ZW.1 of the Swiss SARS-CoV-2 wastewater surveillance, sampled in Basel on 2025-12-14.	3		Coldwater, Quentin; Quinn, Alice; Waugh, Eliot			Composite sampling	0.9043	Only reads mapped to SARS-CoV-2	Wastewater	College or university	Aligned reads				United States of America	Brakebills Sewage Works	Brakebills		freyja 2.0.5	10_06_2026-05-25	XFG.17: 40.0%, XFG.4: 10.3%, XFG.19: 9.6%, PQ.32: 6.6%, PQ.10.1.4: 5.3%, PQ.39.1: 4.8%, QT.3: 4.7%, RE.2.1: 4.7%, XFG.4.5: 3.2%, PQ.18: 3.1%, Other: 7.6%	XFG.17: 40.00%, XFG.4: 10.34%, XFG.19: 9.56%, PQ.32: 6.59%, PQ.10.1.4: 5.28%, PQ.39.1: 4.83%, QT.3: 4.69%, RE.2.1: 4.66%, XFG.4.5: 3.23%, PQ.18: 3.14%, PQ.6.1.1: 2.98%, XFG.3.8.1: 2.25%, PQ.39: 1.34%, PQ.17.11: 0.35%, PQ.17.3: 0.33%, XFG: 0.25%, XGC: 0.12%	WW_000001Y.1/lineagePrevalence/WW_000001Y.1.lineage_prevalence.svg	285.7	XFG.17	Wastewater pathogen surveillance	Longitudinal surveillance (repeat sampling)	Reads mapped to NC_045512.2 and primer-clipped with samtools ampliconclip (ARTIC v5.4.2), subsampled to about 50000	Brakebills Department of Physical Magic	2026-08-24		US-BRAKEBILLS-SW-1	Institution-level surveillance	Fillory Genomics Laboratory	alice.quinn@brakebills.example	Alice Quinn	Amplicon sequencing assay		Illumina MiSeq	BB-2026-08-24	Sanitary sewer system	400	"[{""fileId"":""FILE_000001Y"",""name"":""BB-2026-08-24.bam"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000001Y.1/reads/BB-2026-08-24.bam""}]"	"[{""fileId"":""FILE_00000JX"",""name"":""WW_000001Y.1.vcf"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000001Y.1/snvs/WW_000001Y.1.vcf""}]"	"[{""fileId"":""FILE_00000KV"",""name"":""WW_000001Y.1.depth.tsv"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000001Y.1/depth/WW_000001Y.1.depth.tsv""}]"	"[{""fileId"":""FILE_00000LT"",""name"":""WW_000001Y.1.lineage_prevalence.tsv"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000001Y.1/lineagePrevalence/WW_000001Y.1.lineage_prevalence.tsv""},{""fileId"":""FILE_00000MR"",""name"":""WW_000001Y.1.lineage_prevalence.svg"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000001Y.1/lineagePrevalence/WW_000001Y.1.lineage_prevalence.svg""}]"