accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	versionStatus	versionComment	pipelineVersion	amplicon_pcr_primer_scheme	authors	bioproject_accession	biosample_accession	collection_method	coverage_10x	dehosting_method	environmental_material	environmental_site	genomic_data_type	geo_loc_latitude	geo_loc_longitude	geo_loc_name_city	geo_loc_name_country	geo_loc_name_site	geo_loc_name_state_province_territory_region	insdc_sequence_read_accession	lineage_analysis_software	lineage_barcodes_version	lineage_prevalence	lineage_prevalence_full	lineage_prevalence_plot	mean_depth	predominant_lineage	purpose_of_sampling	purpose_of_sequencing	raw_sequence_data_processing_method	sample_collected_by	sample_collection_date	sample_collection_end_date	sampling_site_id	scale_of_sampling	sequenced_by	sequenced_by_contact_email	sequenced_by_contact_name	sequencing_assay_type	sequencing_date	sequencing_instrument	specimen_sample_collector_sample_id	wastewater_system_type	water_catchment_area_human_population_measurement_value	reads	snvs	depth	lineagePrevalence
WW_000002W.1	WW_000002W	1	BB-2026-09-07	false	testuser	Wastewater test data	1	1791762595	2026-10-11	1791762673	2026-10-11	LATEST_VERSION	Test data: the metadata are fictional. The reads are from WASAP sample https://db.wasap.genspectrum.org/seq/WISE_00016EY.1 of the Swiss SARS-CoV-2 wastewater surveillance, sampled in Basel on 2025-12-26.	3		Coldwater, Quentin; Quinn, Alice; Waugh, Eliot			Composite sampling	0.7418	Only reads mapped to SARS-CoV-2	Wastewater	College or university	Aligned reads				United States of America	Brakebills Sewage Works	Brakebills		freyja 2.0.5	10_06_2026-05-25	BA.3.2: 42.1%, XFG.4.5: 35.8%, MD.1.1: 19.8%, Other: 2.3%	BA.3.2: 42.11%, XFG.4.5: 35.81%, MD.1.1: 19.80%, JN.1.18.5: 0.89%, JN.1.42.2: 0.35%, XFG.1.1: 0.29%, JN.11: 0.25%, JN.13: 0.25%, JN.19: 0.25%	WW_000002W.1/lineagePrevalence/WW_000002W.1.lineage_prevalence.svg	280.0	BA.3.2	Wastewater pathogen surveillance	Longitudinal surveillance (repeat sampling)	Reads mapped to NC_045512.2 and primer-clipped with samtools ampliconclip (ARTIC v5.4.2), subsampled to about 50000	Brakebills Department of Physical Magic	2026-09-07		US-BRAKEBILLS-SW-1	Institution-level surveillance	Fillory Genomics Laboratory	alice.quinn@brakebills.example	Alice Quinn	Amplicon sequencing assay		Illumina MiSeq	BB-2026-09-07	Sanitary sewer system	400	"[{""fileId"":""FILE_000002W"",""name"":""BB-2026-09-07.bam"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000002W.1/reads/BB-2026-09-07.bam""}]"	"[{""fileId"":""FILE_00000E6"",""name"":""WW_000002W.1.vcf"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000002W.1/snvs/WW_000002W.1.vcf""}]"	"[{""fileId"":""FILE_00000F4"",""name"":""WW_000002W.1.depth.tsv"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000002W.1/depth/WW_000002W.1.depth.tsv""}]"	"[{""fileId"":""FILE_00000G2"",""name"":""WW_000002W.1.lineage_prevalence.tsv"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000002W.1/lineagePrevalence/WW_000002W.1.lineage_prevalence.tsv""},{""fileId"":""FILE_00000HZ"",""name"":""WW_000002W.1.lineage_prevalence.svg"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000002W.1/lineagePrevalence/WW_000002W.1.lineage_prevalence.svg""}]"