accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	versionStatus	versionComment	pipelineVersion	amplicon_pcr_primer_scheme	authors	bioproject_accession	biosample_accession	collection_method	coverage_10x	dehosting_method	environmental_material	environmental_site	genomic_data_type	geo_loc_latitude	geo_loc_longitude	geo_loc_name_city	geo_loc_name_country	geo_loc_name_site	geo_loc_name_state_province_territory_region	insdc_sequence_read_accession	lineage_analysis_software	lineage_barcodes_version	lineage_prevalence	lineage_prevalence_full	lineage_prevalence_plot	mean_depth	predominant_lineage	purpose_of_sampling	purpose_of_sequencing	raw_sequence_data_processing_method	sample_collected_by	sample_collection_date	sample_collection_end_date	sampling_site_id	scale_of_sampling	sequenced_by	sequenced_by_contact_email	sequenced_by_contact_name	sequencing_assay_type	sequencing_date	sequencing_instrument	specimen_sample_collector_sample_id	wastewater_system_type	water_catchment_area_human_population_measurement_value	reads	snvs	depth	lineagePrevalence
WW_000005Q.1	WW_000005Q	1	HW-2026-08-31	false	testuser	Wastewater test data	1	1791762595	2026-10-11	1791762673	2026-10-11	LATEST_VERSION	Test data: the metadata are fictional. The reads are from WASAP sample https://db.wasap.genspectrum.org/seq/WISE_000136H.1 of the Swiss SARS-CoV-2 wastewater surveillance, sampled in Basel on 2025-11-27.	3		Granger, Hermione; Longbottom, Neville; Lovegood, Luna			Composite sampling	0.9412	Only reads mapped to SARS-CoV-2	Wastewater	School	SNV frequencies			Hogsmeade	United Kingdom	Hogwarts Castle Drains	Hogwarts		freyja 2.0.5	10_06_2026-05-25	XFG.26: 11.8%, PQ.10.1.4: 11.7%, QS.2: 7.6%, XFG.9.3: 7.5%, XFG.3.26: 7.3%, XFG.3.11: 6.9%, PQ.6.1: 5.1%, QT.3: 4.9%, XEF.3: 3.8%, PQ.14: 3.5%, Other: 29.7%	XFG.26: 11.76%, PQ.10.1.4: 11.65%, QS.2: 7.56%, XFG.9.3: 7.54%, XFG.3.26: 7.29%, XFG.3.11: 6.87%, PQ.6.1: 5.11%, QT.3: 4.93%, XEF.3: 3.83%, PQ.14: 3.51%, PQ.17.12: 3.39%, XFG.3.8.1: 3.15%, XFG.9.3.2: 2.78%, PQ.31.3: 2.52%, XFG.6.14: 2.49%, XFG.6.2.2: 2.30%, XFG.3.15: 2.01%, XDV.1.3: 1.81%, XFG.3.10: 1.62%, PQ.22: 1.56%, XFG.3.4.1: 1.52%, XFY: 1.17%, QF.4: 1.14%, XER: 0.53%, XFG.16: 0.49%, XGA: 0.47%, BA.2.23: 0.34%, XFG.1: 0.20%, XFG: 0.12%, XFG.4: 0.10%	WW_000005Q.1/lineagePrevalence/WW_000005Q.1.lineage_prevalence.svg	375.8	XFG.26	Wastewater pathogen surveillance	Longitudinal surveillance (repeat sampling)	Reads mapped to NC_045512.2 and primer-clipped with samtools ampliconclip (ARTIC v5.4.2), subsampled to about 50000; SNVs called with samtools mpileup and ivar variants without frequency cutoff; depth with samtools depth -a	Hogwarts Office of the Caretaker	2026-08-31		GB-HOGWARTS-CASTLE-1	Institution-level surveillance	Hogwarts Potions Laboratory	hermione.granger@hogwarts.example	Hermione Granger	Amplicon sequencing assay		Illumina MiSeq	HW-2026-08-31	Combined sewer system	1000		"[{""fileId"":""FILE_000006N"",""name"":""HW-2026-08-31.vcf.gz"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000005Q.1/snvs/HW-2026-08-31.vcf.gz""}]"	"[{""fileId"":""FILE_000007L"",""name"":""HW-2026-08-31.depth.tsv.gz"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000005Q.1/depth/HW-2026-08-31.depth.tsv.gz""}]"	"[{""fileId"":""FILE_00000UB"",""name"":""WW_000005Q.1.lineage_prevalence.tsv"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000005Q.1/lineagePrevalence/WW_000005Q.1.lineage_prevalence.tsv""},{""fileId"":""FILE_00000V9"",""name"":""WW_000005Q.1.lineage_prevalence.svg"",""url"":""https://wastewater.loculus.chaoran.name/seq/WW_000005Q.1/lineagePrevalence/WW_000005Q.1.lineage_prevalence.svg""}]"
