WW_00001V8.1
Sample
Collector sample ID
A2_15_2026_05_19
Sample collected by
Not Provided
Purpose of sampling
Wastewater pathogen surveillance
Sampling site and collection
Collection (start) date
2026-05-19
Country
Switzerland
State/province/region
Basel-Stadt
City
Basel
Sampling site ID
CH-BASEL
Sequencing
Purpose of sequencing
Not Provided
Sequenced by
Not Provided
Sequencing contact name
Not Provided
Sequencing contact email
Not Provided
Sequencing instrument
Not Provided
Genomic data
Genomic data type
Aligned reads
Mean depth
4093.3
Genome covered at depth 10 or more
51.44%
Lineage prevalence
Predominant lineage
RF.5.1
Lineage prevalence
RF.5.1: 33.3%, RV.1.1: 18.2%, RK.1.2: 16.1%, RV.1: 14.0%, XDV.1.3: 8.9%, XGY: 8.0%, Other: 1.5%
Lineage prevalence chart
Lineage analysis software
freyja 2.0.5
Lineage barcodes version
10_06_2026-05-25
Submission details
Submission ID
WISE_0001NFE
Version comment
Imported from WASAP: https://db.wasap.genspectrum.org/seq/WISE_0001NFE.1
Submitting group
Date submitted
2026-10-11 23:53:38 UTC
Date released
2026-10-12 00:56:54 UTC
Files
Aligned reads (BAM)
SNV frequencies (VCF)
Depth per site (TSV)
Lineage prevalence (TSV, SVG)
