This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

WW_00002MP.1

Sample

Collector sample ID
B2_15_2026_07_20
Sample collected by
Not Provided
Purpose of sampling
Wastewater pathogen surveillance

Sampling site and collection

Collection (start) date
2026-07-20
Country
Switzerland
State/province/region
Basel-Stadt
City
Basel
Sampling site ID
CH-BASEL

Sequencing

Purpose of sequencing
Not Provided
Sequenced by
Not Provided
Sequencing contact name
Not Provided
Sequencing contact email
Not Provided
Sequencing instrument
Not Provided

Genomic data

Genomic data type
Aligned reads
Mean depth
20574.4
Genome covered at depth 10 or more
30.33%

Lineage prevalence

Predominant lineage
PC.2.1.1
Lineage prevalence
PC.2.1.1: 100.0%
Lineage prevalence chart
Bar chart of estimated lineage prevalence
Lineage analysis software
freyja 2.0.5
Lineage barcodes version
10_06_2026-05-25

Submission details

Submission ID
WISE_0001SK1
Version comment
Imported from WASAP: https://db.wasap.genspectrum.org/seq/WISE_0001SK1.1
Submitting group
Date submitted
2026-10-11 23:53:38 UTC
Date released
2026-10-12 00:56:54 UTC

Files

Aligned reads (BAM)
SNV frequencies (VCF)
Depth per site (TSV)
Lineage prevalence (TSV, SVG)